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Evolution on the Hypercube

Student-Run Research Seminar

Speaker: Damien Pitman, UC Davis
Location: 693 Kerr
Start time: Wed, Mar 9 2005, 12:10PM

In this talk we will introduce the random process of independent edge percolation on the dimensional discrete cube (a.k.a. the hypercube) and state some of the early results related to this process. A biological application of these results to the evolution of species will be discussed as time allows.

The dimensional cube can be described as the graph with vertex set corresponding to the set of binary strings of length and edge set corresponding to those pairs of binary strings that differ in exactly one coordinate. The hypercube can be used as a model for the space of genetic sequences of length . The hypercube has a good edge set because two genotypes are adjacent in the hypercube exactly when one can be obtained from the other by a single mutation. Independent edge percolation chooses a random subset of the edge set. This random subset could correspond to those mutations that a sequence actually underwent in biological evolution.