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Cluster varieties are log Calabi-Yau varieties which are a union of algebraic tori glued by birational "mutation" maps. Partial compactifications of the varieties, studied by Gross, Hacking, Keel, and Kontsevich, generalize the polytope construction of toric varieties. However, it is not clear from the definitions how to characterize the polytopes giving compactifications of cluster varieties. We will show how to describe the compactifications easily by broken line convexity. As an application, we will see the non-integral vertex in the Newton Okounkov body of Gr(3,6) comes from broken line convexity. Further, we will also see certain positive polytopes will give us hints about the Batyrev mirror in the cluster setting. The mutations of the polytopes will be related to the almost toric fibration from the symplectic point of view. Finally, we can see how to extend the idea of gluing of tori in Floer theory which then ended up with the Family Floer Mirror for the del Pezzo surfaces of degree 5 and 6. The talk will be based on a series of joint works with Bossinger, Lin, Magee, Najera-Chavez, and Vienna.